However, based only on the hybridization signal it was not possible to predict INK1197 nmr whether the respective mycotoxin was produced. This could have been

achieved if cDNA would have been used as a target in the array hybridization where differentially learn more expression of mycotoxin genes would have indicated mycotoxin production. Schmidt-Heydt and Geisen [15] used RNA to detect the activation of gene clusters under conditions conducive for the biosynthesis of trichothecenes, fumonisin, ochratoxin, aflotoxin and patulin. However, they found that the biosynthesis of secondary metabolites, like mycotoxins, is dependent on environmental conditions like substrate, pH, temperature and water activity [28] and thus mycotoxins are not always expressed. Conclusions With the multiplexing capacity as one of the important features of microarrays, the method developed in the present study can be used to detect more than one parameter Selleckchem Sepantronium at a time, namely fungal species and genes involved in pathways leading to toxin production. A total of 32 fungi could be identified and their potential to produce mycotoxins could be determined. This study describes the omission of the target amplification step of target DNA prior to hybridization in a DNA-based

microarray experiment. The results indicated that the random labeling technique could provide enough labeled target DNA for the direct detection of a single fungal infection from infected maize kernels using the microarray

In the long term, the developed microarray chip could be used to hybridize DNA and cDNA labeled with different Cy dyes for the simultaneous detection of fungal identity and toxin involved genes. The genomic DNA would determine the fungal identity and the cDNA would determine whether genes for mycotoxin biosynthesis are expressed. The Farnesyltransferase cDNA approach can also be useful to determine which gene clusters are expressed under conditions conducive for the biosynthesis of trichothecenes, fumonisin, ochratoxin, aflatoxin and patulin. Methods Fungal cultures and DNA extraction A total of forty food-borne fungi posing a health threat in South Africa were obtained from the Agricultural Research Council culture collection (ARC), Pretoria, South Africa and are listed in Table 1. Up to two isolates of each taxon were used depending on availability. Further, eight blind samples were taken at random from the forty fungi to validate the array. Fungal strains were grown on 1.5% malt extract agar at 25°C for 1-2 weeks. Total genomic fungal DNA was extracted following the DNA extraction protocol described by Raeder and Broda [29] and column-purified using the QIAquick PCR Purification Kit (QIAGEN). Total genomic DNA of inoculated maize kernels was isolated by the same protocol.